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Status
PPD_0039DQK.1
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Download metadata TSV
Display Name: North_Macedonia/PPD_0039DQK.1/2024-01-01
Jakimovski,
D.; Banovic,
P.; Zana,
B.; Abraham,
A.; Lanszki,
Z.; Gorfol,
T.; Tauber,
Z.; Kuczmog,
A.; Banyai,
K.; Kemenesi,
G.
Submission details
Submission ID
PQ031236.1.L/PQ031235.1.M/PQ031237.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:30:17 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-19 16:17
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
University of Pecs, Szentagothai Research Center
Alignment states and QC metrics L
Completeness L
97.32%
Length L
12138
Total ambiguous nucs L
0
Total deleted nucs L
8
Total frame shifts L
0
Total inserted nucs L
49
Total SNPs L
1281
Total unknown nucs L
314
Alignment states and QC metrics M
Completeness M
99.57%
Length M
5341
Total ambiguous nucs M
0
Total deleted nucs M
15
Total frame shifts M
0
Total inserted nucs M
13
Total SNPs M
1004
Total unknown nucs M
0
Alignment states and QC metrics S
Completeness S
98.56%
Length S
1649
Total ambiguous nucs S
0
Total deleted nucs S
11
Total frame shifts S
0
Total inserted nucs S
12
Total SNPs S
239
Total unknown nucs S
0
Sample details
Collection country
North Macedonia
Collection date
2024-01-01
Isolate name
Kriva Palanka/North Macedonia-1/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PQ031236.1
INSDC accession M
PQ031235.1
INSDC accession S
PQ031237.1
NCBI release date
2024-07-24
Nucleotide mutations
Substitutions
L
L:
G
23
T
L:
C
31
A
L:
A
35
G
L:
A
42
T
L:
G
43
C
L:
T
49
C
L:
A
53
G
L:
T
58
C
L:
C
59
T
L:
C
63
T
L:
C
64
G
L:
T
66
C
L:
A
72
G
L:
A
73
C
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
T
59
C
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
G
67
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
171
A
S:
T
175
A
S:
C
178
A
Show more
Deletions
L:11975-11982, M:165-167, M:318-323, M:5238, M:5252-5256, S:1520, S:1610-1619
Insertions
ins_S:1515:T, ins_S:1577:A, ins_S:1629:CTGTCTTTCA, ins_M:335:ACA, ins_M:5171:C, ins_M:158:CAG, ins_M:5231:TTACAG, ins_L:67:C, ins_L:11924:G, ins_L:11971:CCATACCA, ins_L:12071:TCTGTTATTCTTCTTTCTCTA, ins_L:12094:AAGGGTGTGGGGGGAA, ins_L:12087:CA
Amino acid mutations
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
D
40
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
K
71
R
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
Show more
Deletions
GPC:77, GPC:113-119, GPC:123, GPC:124
Insertions
ins_GPC:103:NMNS, ins_GPC:100:ATSTS
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