This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_0039BKX.1
Download
Download FASTA
Download metadata TSV
Display Name: France/PPD_0039BKX.1/2023-01-01
Picard,
C.; Baize,
S.
Submission details
Submission ID
PP067064.1.L/PP067078.1.M/PP067050.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:30:17 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-19 16:17
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Institut Pasteur, Virology
Alignment states and QC metrics L
Completeness L
97.77%
Length L
11838
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
239
Total unknown nucs L
0
Alignment states and QC metrics M
Completeness M
80.79%
Length M
4335
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
377
Total unknown nucs M
0
Alignment states and QC metrics S
Completeness S
86.66%
Length S
1449
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
106
Total unknown nucs S
0
Sample details
Collection country
France
Collection date
2023-01-01
Isolate name
9AG6
Host
Host name scientific
Hyalomma marginatum
Host taxon id
34627
INSDC
INSDC accession L
PP067064.1
INSDC accession M
PP067078.1
INSDC accession S
PP067050.1
NCBI release date
2024-01-21
Nucleotide mutations
Substitutions
L
L:
G
93
A
L:
A
220
G
L:
T
254
A
L:
A
298
G
L:
C
313
T
L:
T
340
C
L:
T
550
A
L:
G
553
A
L:
C
568
T
L:
G
619
A
L:
C
673
T
L:
C
727
T
L:
A
745
G
L:
G
766
A
L:
T
781
C
L:
T
790
C
L:
C
829
T
L:
A
859
G
Show more
M
M:
G
818
A
M:
A
833
G
M:
A
840
G
M:
T
860
C
M:
T
866
C
M:
T
872
C
M:
T
887
C
M:
G
890
C
M:
T
897
C
M:
A
899
T
M:
G
908
A
M:
A
911
T
M:
T
938
C
M:
A
941
G
M:
G
944
A
M:
A
955
G
M:
T
968
C
M:
C
983
T
Show more
S
S:
G
67
A
S:
G
99
A
S:
G
100
A
S:
C
178
A
S:
G
189
A
S:
T
199
C
S:
G
202
A
S:
G
229
A
S:
C
235
T
S:
A
247
G
S:
G
271
A
S:
C
295
T
S:
A
298
G
S:
A
322
G
S:
A
327
G
S:
G
346
A
S:
A
358
C
S:
C
370
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
GPC
GPC:
K
250
E
GPC:
Q
273
H
GPC:
K
288
R
GPC:
T
298
A
GPC:
K
302
E
GPC:
P
334
H
GPC:
G
336
K
GPC:
L
337
P
GPC:
E
341
K
GPC:
I
377
V
GPC:
V
385
A
GPC:
V
433
L
GPC:
I
445
A
GPC:
A
448
T
GPC:
Y
455
H
GPC:
V
459
T
GPC:
D
484
G
GPC:
A
511
V
Show more
NP
NP:
R
15
K
NP:
R
45
K
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
T
418
I
NP:
K
428
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
223
M
RdRp:
I
261
M
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
I
783
V
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1029
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
H
1161
N
RdRp:
D
1173
N
RdRp:
V
1228
I
RdRp:
N
1244
S
Show more
Deletions
None
Insertions
None
Load sequences