This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0039AY6.1

Display Name: Iran/PPD_0039AY6.1/2023-04-01
Mohammadi-Ghalehbin, B.; Soozangar, N.; Jeddi, F.; Mirzanejad-Asl, H.; Molaei, S.; Habibzadeh, S.; Peeri Doghaheh, H.; Mohammadshahi, J.; Spotin, A.

Submission details

Submission ID
OR391533.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:30:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-19 16:17insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Tabriz University od Medical Sceinces, Parasitolgy and Mycology

Alignment states and QC metrics S

Completeness S
37.98%
Length S
467
Total ambiguous nucs S
0
Total deleted nucs S
168
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
70
Total unknown nucs S
0

Sample details

Collection country
Iran
Collection date
2023-04-01
Isolate name
56-203335

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
OR391533.1
NCBI release date
2023-10-07

Nucleotide mutations

Substitutions

S

  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
    • Deletions
    S:647-814
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None