This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00396MY.1

Display Name: Turkey/PPD_00396MY.1/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.; Erdem, E.; Dal, T.

Submission details

Submission ID
ON640910.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:28:16 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-19 16:17insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics L

Completeness L
69.62%
Length L
8430
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
866
Total unknown nucs L
0

Sample details

Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C2M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
ON640910.1
NCBI release date
2023-02-21

Nucleotide mutations

Substitutions

L

  • L:T3505C
  • L:G3523A
  • L:T3529C
  • L:G3568A
  • L:C3571T
  • L:C3572T
  • L:A3583G
  • L:C3586T
  • L:T3589G
  • L:C3595T
  • L:T3607C
  • L:G3628A
  • L:A3630G
  • L:T3646C
  • L:G3652A
  • L:G3676A
  • L:A3679G
  • L:A3685T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    RdRp

  • RdRp:D1171E
  • RdRp:K1185R
  • RdRp:R1212K
  • RdRp:V1228I
  • RdRp:K1282M
  • RdRp:V1317I
  • RdRp:I1363V
  • RdRp:N1367D
  • RdRp:L1386I
  • RdRp:S1436N
  • RdRp:S1454A
  • RdRp:R1456K
  • RdRp:I1458L
  • RdRp:R1478K
  • RdRp:V1495I
  • RdRp:V1577I
  • RdRp:V1601I
  • RdRp:K1656R
    • Deletions
    None
    Insertions
    None