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Status
PPD_00396ED.1
Download
Download FASTA
Download metadata TSV
Display Name: Turkey/PPD_00396ED.1/2021-01-01
Kalaycioglu,
A. T.; Oguzoglu,
T. C.; Ari,
O.; Durmaz,
R.; Engin,
A.; Bakir,
M.; Erdem,
E.
Submission details
Submission ID
ON623087.1.L/ON623081.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:17:00 UTC
Date released
2024-11-19 16:28:16 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-11-19 16:17
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Alignment states and QC metrics L
Completeness L
69.56%
Length L
8422
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
883
Total unknown nucs L
0
Alignment states and QC metrics M
Completeness M
100.00%
Frame shifts M
GPC:78(nt:322-323),GPC:167-169(nt:589-598)
Length M
5364
Total ambiguous nucs M
0
Total deleted nucs M
8
Total frame shifts M
2
Total inserted nucs M
6
Total SNPs M
1033
Total unknown nucs M
0
Sample details
Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-GIRESUN-C4M-2021
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
ON623087.1
INSDC accession M
ON623081.1
NCBI release date
2023-02-20
Nucleotide mutations
Substitutions
L
L:
T
3505
C
L:
G
3523
A
L:
T
3529
C
L:
T
3565
G
L:
G
3568
A
L:
A
3570
C
L:
C
3571
T
L:
C
3572
T
L:
A
3583
G
L:
C
3586
T
L:
C
3595
T
L:
T
3607
C
L:
T
3625
C
L:
T
3646
C
L:
G
3652
A
L:
A
3653
T
L:
A
3654
C
L:
G
3676
A
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
M:
T
113
C
Show more
Deletions
M:167-169, M:318-321, M:588
Insertions
ins_M:158:CAG, ins_M:5171:T, ins_M:323:G, ins_M:598:T
Amino acid mutations
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
L
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
T
34
N
GPC:
M
35
T
Show more
RdRp
RdRp:
D
1163
E
RdRp:
N
1165
T
RdRp:
K
1193
S
RdRp:
R
1212
K
RdRp:
G
1214
S
RdRp:
V
1228
I
RdRp:
V
1317
I
RdRp:
N
1367
D
RdRp:
L
1386
I
RdRp:
S
1436
N
RdRp:
S
1454
A
RdRp:
R
1456
K
RdRp:
I
1458
L
RdRp:
R
1478
K
RdRp:
V
1495
I
RdRp:
V
1577
I
RdRp:
V
1601
I
RdRp:
T
1658
A
Show more
Deletions
GPC:76, GPC:77, GPC:166
Insertions
None
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