This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00372HE.1

Display Name: Uganda/PPD_00372HE.1/2022-11-06
Balinandi, S.; Whitmer, S.; Mulei, S.; Nassuna, C.; Pimundu, G.; Muyigi, T.; Kainulainen, M.; Shedroff, E.; Krapiunaya, I.; Scholte, F.; Nyakarahuka, L.; Tumusiime, A.; Kyondo, J.; Baluku, J.; Kiconco, J.; Harris, J. R.; Ario, A. R.; Kagirita, A.; Bosa, H. K.; Ssewanyana, I.; Nabadda, S.; Mwebesa, H. G.; Aceng, J. R.; Atwine, ..., J.

Submission details

Submission ID
OQ673003.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-19 16:14:33 UTC
Date released
2024-11-19 16:14:47 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-11-19 16:14insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
99.89%
Length
18856
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
2
Total SNPs
137
Total stop codons
0
Total unknown nucs
0

Sample details

Collection country
Uganda
Collection date
2022-11-06
Isolate name
Ebolavirus/H.sapiens-wt/Uganda/2022/2022005182_C156

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OQ673003.1
NCBI release date
2023-08-08
NCBI update date
2024-09-09

Nucleotide mutations

Substitutions

  • T32G
  • A309G
  • A314G
  • A496G
  • G575A
  • T718C
  • G982A
  • T1063C
  • A1537C
  • C1646T
  • A1669G
  • T1816G
  • C1837T
  • A1978G
  • G1984A
  • C2094T
  • C2194T
  • A2293G
    • Deletions
    None
    Insertions
    ins_18870:CG

    Amino acid mutations

    Substitutions

    GP

  • GP:G3S
  • GP:S408N

    • L

  • L:K43R
  • L:K651N
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:V1600I
  • L:N1822D
  • L:P1877S
  • L:K1911R
  • L:N1916T

    • NP

  • NP:V40I
  • NP:S546L
  • NP:G645R
  • NP:R711C
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:N153S
  • VP35:I190T
  • VP35:P274L

    • VP40

  • VP40:R2K

    • sGP

  • sGP:G3S

    • ssGP

  • ssGP:G3S
    • Deletions
    None
    Insertions
    None