This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0028JQH.1

Restricted sequence

This sequence is only available under the Restricted Use Terms. If you make use of this data, you must follow the terms of use.

Display Name: Pakistan/PPD_0028JQH.1/2023-08-26
Jane Doe

Submission details

Submission ID
test_NIHPAK-19
Submitter
corneliusroemer
Submitting group
Cornelius Test Group
Date submitted
2024-09-17 11:35:42 UTC
Date released
2024-09-17 11:36:05 UTC

Data use terms

Data use terms
RESTRICTED

Data Use Terms History

ChangedUserData Use Terms
2024-09-17 11:35corneliusroemerRESTRICTED until 2025-03-17
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data

Authors

Author affiliations
National Institute of Health, Department of Virology

Alignment states and QC metrics L

Completeness L
96.90%
Length L
12094
Total ambiguous nucs L
0
Total deleted nucs L
13
Total frame shifts L
0
Total inserted nucs L
33
Total SNPs L
1410
Total unknown nucs L
341

Sample details

Collection subdivision level 2
Hogwarts
Collection country
Pakistan
Collection date
2023-08-26
Isolate name
CCHF/NIHPAK-19/2023

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Alignment states and QC metrics M

Length M
1591

Alignment states and QC metrics S

Length S
5258

Nucleotide mutations

Substitutions

L

  • L:G32A
  • L:A35G
  • L:T49C
  • L:T61G
  • L:T67A
  • L:G69T
  • L:G88A
  • L:G93A
  • L:A109G
  • L:G119A
  • L:A124G
  • L:T131A
  • L:C136T
  • L:T139C
  • L:C145T
  • L:C148T
  • L:T151C
  • L:T160C
    • Deletions
    L:70, L:71, L:11918-11920, L:11981, L:11982, L:12028, L:12034, L:12035, L:12073, L:12088, L:12089
    Insertions
    ins_L:12063:C, ins_L:12096:GCTC, ins_L:12079:C, ins_L:11924:NTCTG, ins_L:58:TCT, ins_L:11977:A, ins_L:11973:A, ins_L:12053:CTACAATGTTTTCAGCT

    Amino acid mutations

    Substitutions

    RdRp

  • RdRp:S6N
  • RdRp:G15S
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:T163A
  • RdRp:M172V
  • RdRp:S205P
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:K522R
  • RdRp:T720S
    • Deletions
    None
    Insertions
    None