This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_0028FX6.1
Download FASTA
Display Name: North_Macedonia/PPD_0028FX6.1/2023-01-01
D. Cadar,
D. Osmani,
E.G. Toth,
G. Bosevska,
P. Emmerich,
R. von Possel
Submission details
Submission ID
PP963971.1.L/PP963972.1.M/PP963973.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:46:25 UTC
Date released
2024-08-27 20:51:57 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 20:46
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Bernhard Nocht Institute for Tropical Medicine, Virus Genomics and Evolution
Alignment states and QC metrics L
Completeness L
68.06%
Length L
11902
Total ambiguous nucs L
0
Total deleted nucs L
19
Total frame shifts L
0
Total inserted nucs L
2
Total SNPs L
863
Total unknown nucs L
3678
Alignment states and QC metrics M
Completeness M
82.30%
Length M
5204
Total ambiguous nucs M
0
Total deleted nucs M
62
Total frame shifts M
0
Total inserted nucs M
3
Total SNPs M
875
Total unknown nucs M
847
Alignment states and QC metrics S
Completeness S
58.55%
Length S
1480
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
136
Total unknown nucs S
501
Sample details
Collection country
North Macedonia
Collection date
2023-01-01
Isolate name
Skopje-2795
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PP963971.1
INSDC accession M
PP963972.1
INSDC accession S
PP963973.1
NCBI release date
2024-07-06
Nucleotide mutations
Substitutions
L
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
131
A
L:
C
148
T
L:
T
151
C
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
T
202
C
L:
T
229
C
L:
A
240
C
L:
T
253
C
L:
T
254
A
L:
G
264
A
L:
C
265
T
L:
A
268
G
Show more
M
M:
T
40
C
M:
G
50
A
M:
A
51
G
M:
A
61
T
M:
T
67
C
M:
T
68
C
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
C
85
T
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
G
171
A
S:
T
175
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
Show more
Deletions
L:50-53, L:59-73, M:318-323, M:5147-5155, M:5199-5215, M:5220, M:5223, M:5224, M:5232-5235, M:5239-5255, M:5281-5286
Insertions
ins_M:335:ACA, ins_L:11928:CG
Amino acid mutations
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
P
GPC:
E
26
A
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
D
40
T
GPC:
N
41
S
GPC:
P
42
Q
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
G
335
W
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
I
131
M
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
S
232
F
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
GPC:77, GPC:105
Insertions
ins_GPC:114:T
Load sequences