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PPD_0028DZ4.1
Download FASTA
Display Name: Kazakhstan/PPD_0028DZ4.1/2022-01-01
A.B. Shevtsov,
G.Z. Tokmurziyeva,
N.A. Turebekov,
N.B. Tukhanova,
T.I. Nurmakhanov,
V.P. Sadovskaya
Submission details
Submission ID
OR633378.1.L/OR633376.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:46:25 UTC
Date released
2024-08-27 20:51:26 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 20:46
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National center for biotechnology, Kazakhstan, Laboratory of applied genetics
Alignment states and QC metrics L
Completeness L
6.21%
Length L
752
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
110
Total unknown nucs L
0
Alignment states and QC metrics S
Completeness S
41.99%
Length S
702
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
84
Total unknown nucs S
0
Sample details
Collection subdivision level 2
Asia
Collection country
Kazakhstan
Collection date
2022-01-01
Host
Host name scientific
Hyalomma scupense
Host taxon id
1260755
INSDC
INSDC accession L
OR633378.1
INSDC accession S
OR633376.1
NCBI release date
2023-10-29
Nucleotide mutations
Substitutions
L
L:
A
379
G
L:
A
385
T
L:
T
403
A
L:
A
416
G
L:
T
430
C
L:
T
442
A
L:
T
451
C
L:
T
466
C
L:
C
475
T
L:
C
481
T
L:
T
499
C
L:
C
505
T
L:
T
509
C
L:
G
511
A
L:
A
523
G
L:
G
538
T
L:
G
543
A
L:
T
550
G
Show more
S
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
G
76
A
S:
T
79
C
S:
C
82
T
S:
G
99
A
S:
A
109
G
S:
A
118
G
S:
G
136
A
S:
T
144
A
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
T
199
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NP
NP:
R
15
K
NP:
F
30
Y
NP:
V
83
A
NP:
S
105
L
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
I
114
V
RdRp:
R
156
K
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
R
302
K
Deletions
None
Insertions
None
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