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Status
PPD_0028C5U.1
Download FASTA
Display Name: China/PPD_0028C5U.1/2021-04-15
B. Wang,
J. Wang,
J. Zhou,
X. Xia,
Y. Wang
Submission details
Submission ID
OQ633002.1.L/OQ633004.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:46:25 UTC
Date released
2024-08-27 20:51:26 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 20:46
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Kunming University of Science and Technology, Faculty of Life Science and Technology
Alignment states and QC metrics L
Completeness L
97.77%
Frame shifts L
RdRp:778-779(nt:2406-2413)
Length L
11838
Total ambiguous nucs L
0
Total deleted nucs L
4
Total frame shifts L
1
Total inserted nucs L
4
Total SNPs L
2397
Total unknown nucs L
0
Alignment states and QC metrics S
Completeness S
86.66%
Length S
1449
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
259
Total unknown nucs S
0
Sample details
Collection subdivision level 2
Asia
Collection country
China
Collection date
2021-04-15
Isolate name
YNDQ-L415G
Host
Host name scientific
Capricornis milneedwardsii
Host taxon id
1073286
INSDC
INSDC accession L
OQ633002.1
INSDC accession S
OQ633004.1
NCBI release date
2023-05-30
Nucleotide mutations
Substitutions
L
L:
C
82
G
L:
T
86
C
L:
G
88
A
L:
G
93
A
L:
C
95
A
L:
A
109
G
L:
C
117
A
L:
T
121
C
L:
A
124
G
L:
G
130
A
L:
T
131
A
L:
T
139
C
L:
T
151
C
L:
T
154
A
L:
T
157
C
L:
G
172
C
L:
G
175
A
L:
C
199
T
Show more
S
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
C
70
T
S:
G
73
A
S:
T
79
C
S:
A
85
G
S:
A
92
C
S:
C
97
T
S:
T
106
C
S:
A
109
G
S:
A
118
G
S:
A
121
G
S:
T
127
C
S:
A
130
G
S:
C
154
T
S:
T
155
C
S:
T
163
C
Show more
Deletions
L:2395-2397, L:2405
Insertions
ins_L:2413:CGTT
Amino acid mutations
Substitutions
NP
NP:
M
13
L
NP:
Y
34
H
NP:
S
39
N
NP:
S
52
G
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
V
141
I
NP:
N
144
S
NP:
A
154
S
NP:
G
185
S
NP:
N
188
S
NP:
H
195
R
NP:
V
198
I
NP:
D
199
E
NP:
V
205
I
NP:
I
220
V
NP:
I
246
V
Show more
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
L
7
I
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
H
56
Y
RdRp:
Y
60
N
RdRp:
I
61
V
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
T
RdRp:
A
122
T
RdRp:
D
135
E
RdRp:
I
157
M
RdRp:
T
163
V
Show more
Deletions
RdRp:777
Insertions
None
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