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PPD_00289UJ.1

Display Name: Kazakhstan/PPD_00289UJ.1/2021-05-14
A.K. Nakhanov, G.O. Shynybekova, K.B. Barakbayev, K.D. Zakarya, K.T. Sultankulova, M.B. Orynbayev, N.N. Mukhami, N.S. Kozhabergenov, O.V. Chervyakova, Y.D. Burashev

Submission details

Submission ID
ON783805.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:46:25 UTC
Date released
2024-08-27 20:50:55 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 20:46insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Research Institute for Biological Safety Problems, Molecular Biology and Genetic Engineering

Alignment states and QC metrics S

Completeness S
29.13%
Length S
488
Total ambiguous nucs S
1
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
69
Total unknown nucs S
0

Sample details

Collection subdivision level 1
Zhalagash
Collection subdivision level 2
Asia
Collection country
Kazakhstan
Collection date
2021-05-14

INSDC

INSDC accession S
ON783805.1
NCBI release date
2022-10-19

Nucleotide mutations

Substitutions

S

  • S:T157C
  • S:C166T
  • S:C178A
  • S:T181C
  • S:T182C
  • S:T220C
  • S:G229A
  • S:C235T
  • S:C241T
  • S:C244T
  • S:A247G
  • S:T250A
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T277C
  • S:T283C
  • S:T289C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
    • Deletions
    None
    Insertions
    None