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PPD_00289QS.1

Display Name: Turkey/PPD_00289QS.1/2021-01-01
A. Engin, A.T. Kalaycioglu, E. Erdem, M. Bakir, O. Ari, R. Durmaz, T.C. Oguzoglu

Submission details

Submission ID
ON668035.1.M
Submitter
insdc_ingest_user
Date submitted
2024-08-27 20:46:25 UTC
Date released
2024-08-27 20:50:55 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
Bay, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics M

Completeness M
100.00%
Frame shifts M
GPC:78-77(nt:322-323)
Length M
5364
Total ambiguous nucs M
0
Total deleted nucs M
7
Total frame shifts M
1
Total inserted nucs M
5
Total SNPs M
1039
Total unknown nucs M
0

Sample details

Collection subdivision level 2
Asia
Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C13F-2021

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession M
NCBI release date
2023-02-22

Nucleotide mutations

Substitutions

M

  • M:T40A
  • M:G50A
  • M:A51G
  • M:T67C
  • M:T68C
  • M:A69G
  • M:T71A
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:T86C
  • M:A90G
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A104G
  • Deletions
    M:167-169, M:318-321
    Insertions
    ins_M:158:CGG, ins_M:323:G, ins_M:5171:T

    Amino acid mutations

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:G16C
  • GPC:E19G
  • GPC:T20A
  • GPC:S23R
  • GPC:H24L
  • GPC:E26T
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:T34N
  • GPC:M35T
  • Deletions
    GPC:76, GPC:77
    Insertions
    None