This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Loculus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Contact
Status
PPD_001QSV1.1
Download FASTA
Display Name: Russia/PPD_001QSV1.1/2023-01-01
A.N. Guseva,
A.S. Antonov,
A.Y. Galkina,
D.V. Ustinov,
E.A. Gusev,
E.V. Molchanova,
I.M. Shpak,
M.P. Izhberdeeva,
N.V. Boroday
Submission details
Submission ID
OR757512.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:43:32 UTC
Date released
2024-08-27 20:54:43 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 20:44
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Volgograd Plague Control Research Institute, Laboratory of Bioinformatics
Alignment states and QC metrics
Completeness
99.89%
Frame shifts
NS2A:122-124(nt:3889-3895),NS4B:31-33(nt:7006-7014)
Length
11038
Total ambiguous nucs
0
Total deleted nucs
20
Total frame shifts
2
Total inserted nucs
41
Total SNPs
2234
Total stop codons
0
Total unknown nucs
0
Sample details
Collection subdivision level 1
Vladikavkaz
Collection subdivision level 2
Europe
Collection country
Russia
Collection date
2023-01-01
Isolate name
Vladikavkaz 1336/23
Host
Host name scientific
Anopheles maculipennis
Host taxon id
41429
INSDC
INSDC accession
OR757512.1
NCBI release date
2023-11-19
NCBI update date
2023-11-19
Lineage
Lineage
2
Nucleotide mutations
Substitutions
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
G
186
A
T
199
C
C
204
T
C
210
T
C
216
G
G
222
C
A
231
T
T
234
C
C
246
T
C
255
T
G
261
A
Show more
Deletions
3885-3888, 6994-6996, 10467-10470, 10483-10489, 10904, 10921
Insertions
ins_7014:G, ins_10452:AGA, ins_3895:AATG, ins_10406:GTTGTGTTGGGTAGTTGTATAGT, ins_10495:AT, ins_7005:GTTGA, ins_10501:T, ins_10461:AG
Amino acid mutations
Substitutions
2K
2K:
M
15
L
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
D
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
NS1:
I
194
V
NS1:
R
205
G
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
NS2A:
R
188
K
NS2A:
A
193
S
NS2A:
S
201
C
Show more
NS2B
NS2B:
A
41
V
NS2B:
D
59
N
NS2B:
S
61
T
NS2B:
V
103
A
NS2B:
V
120
I
NS3
NS3:
Q
92
H
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
A
233
S
NS3:
N
253
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
S
334
T
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
T
436
E
NS3:
E
439
D
NS3:
V
450
I
Show more
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
K
24
R
NS4B:
N
26
T
NS4B:
F
27
T
NS4B:
S
28
L
NS4B:
M
29
G
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
L
183
M
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
V
230
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
N
281
S
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
E
55
D
env:
T
64
S
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
T
env:
L
167
F
env:
A
172
S
env:
N
199
G
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
env:
I
253
V
Show more
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
P
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
NS2A:121
Insertions
ins_NS4B:29:V
Load sequences