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PPD_001QRW0.1

Display Name: United_Kingdom/PPD_001QRW0.1/2022-11-01
A. Nunez, A.J. Folly, B. Dunkel, D. Hicks, F. Steinbach, M. Schilling, N. Johnson, T. Floyd

Submission details

Submission ID
OQ857020.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:43:32 UTC
Date released
2024-08-27 20:54:43 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 20:44insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Animal and Plant Health Agency, Virology

Alignment states and QC metrics

Completeness
5.66%
Length
624
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
32
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 2
Europe
Collection country
United Kingdom
Collection date
2022-11-01
Isolate name
WNV-SC-2022-08

Host

Host name scientific
Equus caballus
Host taxon id
9796

INSDC

INSDC accession
OQ857020.1
NCBI release date
2024-04-25
NCBI update date
2024-04-25

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • C8106T
  • C8130T
  • C8220T
  • T8235C
  • G8247A
  • G8271A
  • A8277G
  • G8292A
  • C8296T
  • C8301T
  • T8340C
  • G8346A
  • T8373C
  • T8382C
  • C8388T
  • C8400T
  • A8403G
  • A8409G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS5

  • NS5:K280R
    • Deletions
    None
    Insertions
    None