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PPD_001Q256.1

Display Name: Italy/PPD_001Q256.1/2022-10-12
A. Polci, B. Secondini, F. Monaco, F. Valleriani, G. Savini

Submission details

Submission ID
OQ689697.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:43:32 UTC
Date released
2024-08-27 20:53:38 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 20:44insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Animals Foreign Diseases

Alignment states and QC metrics

Completeness
99.38%
Length
10961
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
471
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Sicily
Collection subdivision level 2
Europe
Collection country
Italy
Collection date
2022-10-12
Isolate name
NRG1424

Host

Host name scientific
Equus caballus
Host taxon id
9796

INSDC

INSDC accession
OQ689697.1
NCBI release date
2023-07-29
NCBI update date
2023-07-29

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • T195A
  • T234C
  • C315T
  • G354A
  • T367C
  • C483T
  • G492A
  • G495T
  • T528C
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T666C
  • C672T
  • C732T
  • G786A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A70S

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:L4M
  • NS3:P249T
  • NS3:T356I
  • NS3:K399R

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:R164C
  • NS4B:E249D

    • NS5

  • NS5:A860T

    • env

  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None