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PPD_001LEUP.1

Display Name: Democratic_Republic_of_the_Congo/PPD_001LEUP.1/2020-07-10
A. Amuri-Aziza, A. Ayouba, A. Legand, A. Rajan, A. Whitesell, A.J. Porzucek, C. Pratt, C.N. Mores, D. Mukadi-Bamuleka, E. Delaporte, E. Kinganda-Lusamaki, E. Lokilo-Lofiko, E. Pukuta-Simbu, E. Shedroff, E. Talundzic, F. Mambu-Mbika, F. Mbuyi, F. Mulangu, F. Muyembe-Mawete, G. Makaya, G. Tshapenda, G.L.T. Folefack, G.N. Soke, H. Kavunga-Membo, ..., T. Shoemaker

Submission details

Submission ID
OR084872.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:43:15 UTC
Date released
2024-08-27 20:52:38 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 20:43insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
97.88%
Length
18832
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
249
Total unknown nucs
275

Sample details

Collection subdivision level 2
Africa
Collection country
Democratic Republic of the Congo
Collection date
2020-07-10
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT002103

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OR084872.1
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Nucleotide mutations

Substitutions

  • T160C
  • C180T
  • C230T
  • C280T
  • G360T
  • G381A
  • A388G
  • A491G
  • G500A
  • A619G
  • A622G
  • C856T
  • C1094T
  • T1156C
  • C1198T
  • G1420A
  • T1540C
  • A1687G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GP

  • GP:V310A
  • GP:G314R
  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:S475G
  • GP:S476G
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:P342S
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:A1517V
  • L:S1720C
  • L:F1742S
  • L:S1747T
  • L:D1888N
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:I517T
  • NP:I527T
  • NP:T536A
  • NP:A540T
  • NP:T557I
  • NP:S644P

    • VP24

  • VP24:M212K

    • VP35

  • VP35:D18N
  • VP35:N204D

    • VP40

  • VP40:A202V
    • Deletions
    None
    Insertions
    None