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PPD_001LD8X.1

Display Name: Democratic_Republic_of_the_Congo/PPD_001LD8X.1/2020-06-26
A. Legand, A. Nkuba-Ndaye, A. de Weggheleire, C.B. Pratt, D. Mukadi-Bamuleka, E. Delaporte, F. Edidi-Atani, F. Mambu-Mbika, J. Bulabula-Penge, J. van Griensven, J.-J. Muyembe-Tamfum, J.D. Klena, J.M. Montgomery, K.K. Arien, M. Peeters, M. Wiley, M.E. Morales-Betoulle, P. Formenty, P. Mbala-Kingebeni, R. Kitenge-Omasumbu, R. Pallawo, S. Ahuka-Mundeke, S. Whitmer

Submission details

Submission ID
OQ348595.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:43:15 UTC
Date released
2024-08-27 20:52:38 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 20:43insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Biosurv International

Alignment states and QC metrics

Completeness
95.22%
Length
18593
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
6
Total SNPs
302
Total unknown nucs
536

Sample details

Collection subdivision level 2
Africa
Collection country
Democratic Republic of the Congo
Collection date
2020-06-26
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Ituri-20FHV039

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OQ348595.1
NCBI release date
2023-02-26
NCBI update date
2023-02-26

Nucleotide mutations

Substitutions

  • C339T
  • G381A
  • A388G
  • T445A
  • A491G
  • C493T
  • G500A
  • G507A
  • A547G
  • C559T
  • A607C
  • A619G
  • C751T
  • C775T
  • A931C
  • C973T
  • C1072T
  • C1198T
    • Deletions
    18404
    Insertions
    ins_18632:TCCTTA

    Amino acid mutations

    Substitutions

    GP

  • GP:V3A
  • GP:V75A
  • GP:E258K
  • GP:E280G
  • GP:V310A
  • GP:L368P
  • GP:S377P
  • GP:S422P
  • GP:P429A
  • GP:A432T
  • GP:T435A
  • GP:F443L
  • GP:E457K
  • GP:K478R
  • GP:I544T

    • L

  • L:T58I
  • L:V79I
  • L:E130D
  • L:Q133H
  • L:T233N
  • L:S428N
  • L:E539K
  • L:S1383N
  • L:V1597A
  • L:F1610L
  • L:R1657G
  • L:R1681S
  • L:N1739S
  • L:F1742S
  • L:G1753S
  • L:Q1793R
  • L:I1824M
  • L:R1914K
  • L:T2028M
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:S13N
  • NP:V459I
  • NP:N478S
  • NP:T503I
  • NP:I517T
  • NP:T522A
  • NP:I527T
  • NP:A540D
  • NP:N547H
  • NP:D548N
  • NP:S644P

    • VP24

  • VP24:K15Q
  • VP24:T34A
  • VP24:K163Q
  • VP24:M212K

    • VP35

  • VP35:Y55H
  • VP35:A56V
  • VP35:I78M
  • VP35:A180T
  • VP35:R197K
  • VP35:N204D

    • VP40

  • VP40:G29S
  • VP40:T255A
  • VP40:T277N

    • sGP

  • sGP:V3A
  • sGP:V75A
  • sGP:E258K
  • sGP:E280G
  • sGP:G331V

    • ssGP

  • ssGP:V3A
  • ssGP:V75A
  • ssGP:E258K
  • ssGP:E280G
    • Deletions
    None
    Insertions
    None